[Dept. of Computer Science] Presentation Schedule

Date Topic Sections Speaker Slides
21 Feb Basic alignment of string sequences 1.1 - 2.3 Roel Wijgers talk 1
23 Feb Heuristic alignment algorithms, cost matrices 2.5 - 2.9 Thomas van Dijk talk 2
28 Feb Markov Chains, Hidden Markov, Viterbi 3 - 3.2 Wouter Duivesteijn talk 3
2 Mar HMM parameter estimation, Baum Welch, Topology, Stability 3.3 - 3.7 Elze de Groot talk 4
7 Mar Alignment using HMMs 4 - 4.6 Wouter Slob
9 Mar Profile HMMs for sequence families, Viterbi equations 5 - 5.5 Roderick Jansen
14 Mar Probability estimation, weights 5.6 - 5.9 Jan-Pieter van den Heuvel
28 Mar Multiple sequence alignment methods 6 - 6.4 Jevgenijs Ivanovs
30 Mar Multiple alignment by HMMs, Phylogenetic Trees 6.5 - 7.2 Ron de Bruijn
4 Apr Phylogenetic trees II 7.3 - 7.7 Shriprakash Sinha
6 Apr Probabilistic models of evolution 8 - 8.4 Pavla Sehnalova
11 Apr More extensive probability models of evolution 8.5 - 8.6 Ting-Shuo Yo
13 Apr Transformational Grammars 9.1 - 9.6 Adriano Galati
18 Apr RNA Structure Analysis 10 - 10.3 Gerben Oostra